Exploiting Local Features from Deep Networks for Image Retrieval

Deep convolutional neural networks have been successfully applied to image classification tasks. When these same networks have been applied to image retrieval, the assumption has been made that the last layers would give the best performance, as they do in classification. We show that for instance-level image retrieval, lower layers often perform better than the last layers in convolutional neural networks. We present an approach for extracting convolutional features from different layers of the networks, and adopt VLAD encoding to encode features into a single vector for each image. We investigate the effect of different layers and scales of input images on the performance of convolutional features using the recent deep networks OxfordNet and GoogLeNet. Experiments demonstrate that intermediate layers or higher layers with finer scales produce better results for image retrieval, compared to the last layer. When using compressed 128-D VLAD descriptors, our method obtains state-of-the-art results and outperforms other VLAD and CNN based approaches on two out of three test datasets. Our work provides guidance for transferring deep networks trained on image classification to image retrieval tasks.Comment: CVPR DeepVision Workshop 201

Beyond Short Snippets: Deep Networks for Video Classification

Convolutional neural networks (CNNs) have been extensively applied for image recognition problems giving state-of-the-art results on recognition, detection, segmentation and retrieval. In this work we propose and evaluate several deep neural network architectures to combine image information across a video over longer time periods than previously attempted. We propose two methods capable of handling full length videos. The first method explores various convolutional temporal feature pooling architectures, examining the various design choices which need to be made when adapting a CNN for this task. The second proposed method explicitly models the video as an ordered sequence of frames. For this purpose we employ a recurrent neural network that uses Long Short-Term Memory (LSTM) cells which are connected to the output of the underlying CNN. Our best networks exhibit significant performance improvements over previously published results on the Sports 1 million dataset (73.1% vs. 60.9%) and the UCF-101 datasets with (88.6% vs. 88.0%) and without additional optical flow information (82.6% vs. 72.8%)

Image Retrieval using Multi-scale CNN Features Pooling

In this paper, we address the problem of image retrieval by learning images representation based on the activations of a Convolutional Neural Network. We present an end-to-end trainable network architecture that exploits a novel multi-scale local pooling based on NetVLAD and a triplet mining procedure based on samples difficulty to obtain an effective image representation. Extensive experiments show that our approach is able to reach state-of-the-art results on three standard datasets.Comment: Accepted at ICMR 202

OpenContrails: Benchmarking Contrail Detection on GOES-16 ABI

Contrails (condensation trails) are line-shaped ice clouds caused by aircraft and are likely the largest contributor of aviation-induced climate change. Contrail avoidance is potentially an inexpensive way to significantly reduce the climate impact of aviation. An automated contrail detection system is an essential tool to develop and evaluate contrail avoidance systems. In this paper, we present a human-labeled dataset named OpenContrails to train and evaluate contrail detection models based on GOES-16 Advanced Baseline Imager (ABI) data. We propose and evaluate a contrail detection model that incorporates temporal context for improved detection accuracy. The human labeled dataset and the contrail detection outputs are publicly available on Google Cloud Storage at gs://goes_contrails_dataset

A scalable system to measure contrail formation on a per-flight basis

Persistent contrails make up a large fraction of aviation's contribution to global warming. We describe a scalable, automated detection and matching (ADM) system to determine from satellite data whether a flight has made a persistent contrail. The ADM system compares flight segments to contrails detected by a computer vision algorithm running on images from the GOES-16 Advanced Baseline Imager. We develop a 'flight matching' algorithm and use it to label each flight segment as a 'match' or 'non-match'. We perform this analysis on 1.6 million flight segments. The result is an analysis of which flights make persistent contrails several orders of magnitude larger than any previous work. We assess the agreement between our labels and available prediction models based on weather forecasts. Shifting air traffic to avoid regions of contrail formation has been proposed as a possible mitigation with the potential for very low cost/ton-CO2e. Our findings suggest that imperfections in these prediction models increase this cost/ton by about an order of magnitude. Contrail avoidance is a cost-effective climate change mitigation even with this factor taken into account, but our results quantify the need for more accurate contrail prediction methods and establish a benchmark for future development.Comment: 25 pages, 6 figure

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

A scalable system to measure contrail formation on a per-flight basis

Persistent contrails make up a large fraction of aviation's contribution to global warming. We describe a scalable, automated detection and matching (ADM) system to determine from satellite data whether a flight has made a persistent contrail. The ADM system compares flight segments to contrails detected by a computer vision algorithm running on images from the GOES-16 Advanced Baseline Imager. We develop a flight matching algorithm and use it to label each flight segment as a match or non-match. We perform this analysis on 1.6 million flight segments. The result is an analysis of which flights make persistent contrails several orders of magnitude larger than any previous work. We assess the agreement between our labels and available prediction models based on weather forecasts. Shifting air traffic to avoid regions of contrail formation has been proposed as a possible mitigation with the potential for very low cost/ton-CO2e. Our findings suggest that imperfections in these prediction models increase this cost/ton by about an order of magnitude. Contrail avoidance is a cost-effective climate change mitigation even with this factor taken into account, but our results quantify the need for more accurate contrail prediction methods and establish a benchmark for future development

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field